Have really enjoyed the progress updates with this project, would love to see more photos! Plus that video you teased in your original post.
Wanted to throw my 2 cents in, I beg your forgiveness for my ramblings...
Appreciate that if the bike works its performance will leave a lot to be desired. Stock that motor put out 40hp,
I have concerns if the 2.8hp of that motor will be able to turn the drive line over.
Hopefully it works well enough to inspire you to move into phase 2 taking what you learned and building on it.
Halving the torque output of the motor (due to the 2:1 ratio from the motor to the cam gear) will not help matters. You might want to try a 1:1 ratio to start with.
With that said it's amazing what low power motors can be capable of. My first bike was a 1980 Puch Maxi, single speed pumping out all of 2hp. Was still able to manage 30mph.
My first bike with gears was a 2004 Aprilia RS50, cranking out a massive 12hp through a 6 speed gearbox. On flat ground 80 was doable, put a hill in front and 60 was it.
The transmission is going to be your best friend.
I am curious to see how much vibration is introduced by the now unbalanced crank lobes, hopefully minimal but excessive vibrations could cause premature bearing wear/failure.
If you have any plans to open the motor cases I would strongly suggest cutting off as much counterweight material as possible.
+1 on swapping the cam chain for something more robust, a quality 415 chain is more than up to the task. Ideally the motor controller has some sort of "soft start" function to reduce further.
Regarding batteries
I would use lead acid as a last resort, especially buying them new. The weight of a 48v pack would be 100lbs, you would also need to do a lot of work to safely secure them to the bike.
LiFePO4 has around 3x the capacity or 1/3 the weight for the same capacity. There are sources for used cells.
I would suggest leaving the clutch on the bike as an extra layer of safety, if a bracket gear or sprocket breaks you have the ability to disconnect the rear wheel preventing a lock-up situation.
Also where are you located? There might be some local resources that you could utilize.
Happy Building!