I have also noticed this when realizing the output polarity was reversed. It is somehow logical that the comm' ground is the same as that of the DC output. Remember that the Elteks are designed for server usage, which is 48V with variable power. Therefore they are supposed to be tied in parallel but never in series (although it works). As long as tens of FP's are in //, their CAN busses will have a common GND.
Please note that the CAN bus is NOT floating (no transformers or the like). It is referenced to GND, therefore you should wire the GND to your CAN interface (Arduino, Leonardo or other). It "may" work without GND, but that's not sure, result is unpredictable.
Some years ago, in my job, I a had an issue like that, the tester couldn't communicate via CAN with the device under test. A guy told me "there is no problem with the CAN, both lines are well connected". Yes indeed! But with no GND. I added the GND line and it worked immediately.