No, there is a 10A fuse on FX/FXS/FXE bikes in line with the onboard charger. You can see it in your official owner's manual as #4 on page 6.34 for a MY17FXS. https://prismic-io.s3.amazonaws.com/zero-cms-disco/c55944fa-499e-48e2-83f0-c8dd36657607_OM-XMX-MY17.pdf
I've had both that fuse and that fuse holder need to get replaced, and prevent charging with the onboard for different customers. Always surprises people, as no other Zero bike has a charge fuse inline with the onboard
40 years of working on motorcycles I can't recall ever seeing such a bad fuse holder design in such a bad location. It is so low on the bike that you have to wonder how it would do on an FX ridden offroad through a stream?
It took a shot of compressed air to even get it to pop open with the locking pin in the correct position. The fuse itself seems to test OK in a continuity test. The holder contacts are not really corroded at all. What holder have you used as a replacement?
PHOTO OF FUSE HOLDER IN LOCATION:
https://imgur.com/a/yHUZc2N
I'm a Zero dealer, so I usually just end up replacing with the same part. You could probably use any inline fuse holder part off Digikey you felt comfortable splicing in, or maybe even remove it entirely. As I said, most Zero bikes don't have that fuse.
I'm running out of things to check. So when you plug in the charge cord, does the green charge light on the dash come on and show a time to charge? If so, the charger is getting activated and the MBB sees it.
If you measure voltage on the quick charge port, with the bike keyed on(contactor closed), do you get pack voltage(DC Voltage)? Then the 100A charge fuse is good. Side note, the contactor closes when you key on and don't charge right?
If you measure voltage on that port and plug in the charger, does the voltage increase on the quick charge port? It should when the charger is connected, and would indicate the bike is seeing the charger output.
Based on the logs and your reports, it sounds like the charger output is not getting from the charger to the BMSes. Most of the time, that's(in order of probability) a bad charger, bad charge fuse, bad charge fuse holder, or very rarely a wiring problem.
It also wouldn't hurt to get your logs again with a recent charge attempt included with timestamp and both mbb/bms logs.