I see the manual says "Charge the batteries of the motorcycle to 100% at least once every 15 days to balance the cells making up the battery pack correctly." (page 101) Is this what you mean by the 2-week balancing interval? The manual also says "Once the battery charging cycle has started, do not disconnect the plug until it is complete." (page 102)
Don't worry about disconnecting when it says not to. I assumed that was BS, so I asked the same question here and the Energica Service Manager kinda said to ignore that message--at least most of the time.
Use the LPR mode and only fully charge (won't take long) the next time you want to ride by turning off the LPR mode. That will balance the cells and you will start with a full charge.
FWIW, I most often disconnect during that message that says to not disconnect, especially on DC fast charge. And especially on DC chargers where I must pay for the time parked. As soon as the rate falls much below 10 KW, I am usually disconnected. I will get my full charge (and cell balance) when I get home with L2 charging.
The only time I let it charge to full is when I am home and expect to use the bike soon, or if I could need it for the extra range when it's a ways between CCS charge stations . That will NOT happen on I-80 in CA, but can happen many other places.
I find it works out fairly well for me to get my cell balancing just from my normal riding. Once in a while I let it charge to full because of need, as I have the smaller battery.
It's best for the battery to not charge to full too often, regardless of that message, that IMO, they should change the wording of, or perhaps not have it at all.
I have noticed the time left to charge is NOT shown when that message comes on, which I would rather have displayed.
-Don- Reno, NV