I considered this and looked closely at the assembly of them. I observed that on both disks, each point where the disk touches the wheel for a bolt was in full contact, so no way it could be warped from tightening down to the wheel. ( I checked this BEFORE putting any bolts in, and tried several different rotated positions, disk relative to wheel to double check ) I could see no warp or wobble initially in either of the new disks, tested visually by spinning the wheel on the forks, without the calipers attached, and placing a nail as close to the disks as possible to look for a change in distance there.
I did notice that the disk bolt holes have holes that are large enough, relative to the disk bolts, that you can actually put the disk a bit off center, so it would be slightly off balance when rotating. There is a bit of an art there. You have to do your best to center it. But this would not contribute to warpage. This slop also allows for a bit of rotation relative to the wheel, so I placed it resting against the bolts in the direction it would apply force when you brake.
Once the new disks were on, it actually worked properly. There was no pulsing. It was perfect. So if there was a problem with the wheel I would expect it would not work right from the start. I cant think of anything, maybe there is. For about 2k miles I had no pulsing. Then last week I noticed.... uh oh. And every ride it seemed to be more obvious to me.
Its my opinion that these disks are made poorly. The metallurgy is wrong, or the way they are assembled causes some weird loading in the floats. That's another thing I've noticed about these J Juan brakes that I've never seen on any of my other motorcycles... the disk float is enough that it actually makes a little cracking sound moving around in the float points. Standing beside it, I can roll the bike back and brake, then roll the bike forward and brake, and literally hear the disks adjust in the floats.
IDK man but I'm furious about this. This should not be happening. I paid 24 grand for a bike and this elementary crap that works on beater Suzuki's doesn't work on this bike. Like giving a track runner some hobo's shoes to run in with the heel coming off.