Richard,
I will try to give you my opinion on your questions:
1. Battery. There are no Lithium batteries that like to be "fully drained" -including the previous model- (no idea who came up with such advice...). Your assumption is correct.
2. Charging/storaging. This one is a tricky one...I would not recommend you to let the battery charger plugged. Why?
- In the case of a storm you may break it if the line has a big voltage fluctuation (unless you have a especial protection in your house -95% of the houses do not...)
- No need to keep it plugged and generate residual compsumption
If you are planning to not run the bike leave the batteries 30-40% charged, not fully charged...if you discharge partially the battery you may charge it again as this will not damage the battery - Lithium batteries love low discharge...you will keep them healthier by doing that.
3. The way Zero measures power is a "personal one" nominal power, is the one the motor is rated, peak power (I guess the 29 Hp)is a marginal measure.
The "M3" designation is not an standard for electrical motors -not, that I'm aware of-, regular motors have a stamped piece of metal/decal with its main features (Volts, Nominal Power, Nominal Speed, Duty, pole, Hz, etc...), which I guess Zero has removed in the one on the bike.