So after having to wait over a month to get my cable, the newest software is NOTHING -- and likely also the result of the latest revisions to the controller firmware -- like the images, videos, and instructions posted about past models. In some ways, the new stuff is simpler. I did discover a few interesting things though.
For some reason, Zero is writing the top speed values for all drive profiles through the SDO protocol at startup. So you can't change those and have the changes stick. I don't really have a need to go faster than 106, but if I ever change my mind, I might make a little PIC board to simply send the one SDO command a few seconds after startup. It's pretty easy to extract the necessary commands now that I have the software.
Also, Zero leveraged the footbrake input as an RPDO through the canbus, so that has to be deactivated if one wants to use a custom regen lever anymore. And if you do that, you'll want to set your max brake torque to whatever you want in both the drive 1 (eco mode) and baseline (sport) profiles. The regen lever will at least work the way you want for those profiles. In custom, however, the MBB overwrites the brake % at startup or if you try to manipulate it through the app, so it'll max at 8.5%. Your regen lever in custom will be no more powerful than the stock max regen.
Otherwise, smooth sailing. I really don't understand why they don't sell it with adjustable regen in the first place, even if nothing more than a sales gimmick. It's practically free to implement.