Oobflyer, I remember when something like that happened on the way to the Vetter challenge and Jeff Jolin from Zero called me asking if I could help you. I figured that is the same thing PhreaK experienced. If that ever happens, and I have no idea why, but plug it in.
With the PT being higher voltage than the monolith, meaning the PT somehow lost connection and opened up while riding and didn't discharge, but the monolith did. Now on startup, it sees the PT higher so cant close the contactors on both. And although it can run on the monolith only it can't run on the PT only I think is the problem. If you are key cycling, it must mean you stopped somewhere originally for a reason. And hopefully almost everywhere has electricity, I would say plug in and let the monolith charge.
If for some reason wherever you stopped has no electricity and you can't even push the bike to a spot with an outlet, use a 3 mm allen and a small ratchet 90 degree phillips screw driver and remove the tank plastics and just unplug the giant Anderson connector to the powertank. then key cycle, and you should be fine as it will now see only one BMS not 2, and so will run off the lower voltage monolith until you can get home to charge them both to full. This is not an official Zero procedure, just my recommendation on what I would do.
Just like when a computer locks up, or your wifi router can't connect to the internet, or anything. First thing you do is reboot, which many of you try I can tell. I seem to remember another thread where someone towed their bike just to have it work fine after getting it home. First start with a key cycle on the Zero to see if it fixes it. If not, plug it in and come back to it later. Especially if you have a powertank. Letting it sit and charging to full somehow magically fixes things I can't explain. Just like there's no explanation why every week I have to unplug my router in my house for a minute and then replug it in and wait 5 minutes for it to reconnect. I can't explain it, but it works.