I have a couple of bikes with tube-type tires, a Triumph Bonneville and my GPR-S. Both loose air quickly, about two to three pounds every week. It is the tubes. They just leak like a sieve, compared with tubeless tires. Frankly, there just isn't much you can do about it, short of trying different brands of tubes. In my experience, the cheaper Japanese brand tubes, made of synthetic rubber, seem to hold air the best. The worst leakers are the expensive European-brand, heavy-duty, all-natural rubber tubes. They are stronger, but seem to leak air quicker.
Tubes usually don't develop a slow leak due to a mechanical failure, such as a small puncture, without failing quickly (although, of course, it can happen). The bottom line is that your tubes are most likely OK, you just need to check their pressures every week.
I really like the cast wheels and tubeless tires that are installed on my 2012 S. Cleaning is easier and they loose air much more slowly than spoked wheels.