Asking your dealer that is going to do the work is probably the best way to get a clear answer.
But just looking at the parts catalog for the 15' SR here :
https://www.af1racing.com/store/ProdImages/st3/15sr.pdf 46-08034 is the monolith.
40-08031 is the bms board.
And you can see in the diagram roughly how not-integrated they are.
So they are certainly separate parts that could be replaced individually. But if the BMS is replaced or not is probably up to zero, since they would be paying for warranty service. It might be easier/cheaper for zero to ship the monolith as a single part and have your dealer replace that single part rather than have zero pay for their labor to do more disassembly to replace individual parts.
Likely they would replace it all at once, because zero discontinued the 12.5kwh battery pretty quickly, I assume they will replace it with a more updated battery that would then need a matching BMS.
But yeah, if you need this service done, you need it done, so just talk to your dealer about it before your warranty expires.