Short update:
So I went to a ride yesterday, trying to drain the battery as much as possible. I started recording the battery voltages in between to be sure that I won't get stranded somewhere:
27% : 101.12V
14% : 99.50V
11% : 98.90V
4% : 97.77V
0% : 96.8V (135km)
95.0V (145km)
When SOC showed 0% I had traveled 135km on the full charge. I was able to get another 10km until the bike went into "limb" mode. That was fortunately only about 0.5km away from my home, so it was easily possible to get back.
At home, I charged the bike over night to full SOC. Now the "Zero Voltage app" shows "97 AH" as full capacity. So, this indeed demonstrates that "Pack Capacity" is only calculated. So, no clear indicator of what the health of the battery is.
Its calculated capacity of "97 AH" is, however, still significantly below what to expect of a 2016 13.0 battery, if I read the unofficial manual correctly (which states 100AH for a 2013 model and probably at least 10% more for the 2016er). And additionally, the range estimation is now at 142km, which is pretty close to the 145km I managed to get. This is still very much on the low side, I think. I remember that I typically had 150km at the very least, in most cases between 160 and 220km, depending on the mixture of country vs city riding.
Today I will let my local dealer do a firmware update. Then I will see over the next days, what range I am still able to reach. Now, that the "Pack Capacity" is not really a measured value, I guess it would be difficult to prove battery degradation only on the range.